Package: BCEA 2.4.6

Gianluca Baio

BCEA: Bayesian Cost Effectiveness Analysis

Produces an economic evaluation of a sample of suitable variables of cost and effectiveness / utility for two or more interventions, e.g. from a Bayesian model in the form of MCMC simulations. This package computes the most cost-effective alternative and produces graphical summaries and probabilistic sensitivity analysis, see Baio et al (2017) <doi:10.1007/978-3-319-55718-2>.

Authors:Gianluca Baio [aut, cre, cph], Andrea Berardi [aut], Anna Heath [aut], Nathan Green [aut]

BCEA_2.4.6.tar.gz
BCEA_2.4.6.zip(r-4.5)BCEA_2.4.6.zip(r-4.4)BCEA_2.4.6.zip(r-4.3)
BCEA_2.4.6.tgz(r-4.4-any)BCEA_2.4.6.tgz(r-4.3-any)
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BCEA_2.4.6.tgz(r-4.4-emscripten)BCEA_2.4.6.tgz(r-4.3-emscripten)
BCEA.pdf |BCEA.html✨
BCEA/json (API)
NEWS

# Install 'BCEA' in R:
install.packages('BCEA', repos = c('https://n8thangreen.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/n8thangreen/bcea/issues

Datasets:
  • N - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • N.outcomes - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • N.resources - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • QALYs.adv - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • QALYs.death - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • QALYs.hosp - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • QALYs.inf - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • QALYs.pne - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • c.pts - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • cost - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • cost.GP - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.hosp - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.otc - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.time.off - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.time.vac - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.travel - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.trt1 - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.trt2 - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • cost.vac - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • data - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • e.pts - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
  • eff - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • eff - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • life.years - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • pi_post - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • smoking - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • smoking_output - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • treats - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • treats - Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
  • vaccine_mat - Data set for the Bayesian model for the cost-effectiveness of influenza vaccination

On CRAN:

bayesiancost-effectiveness

45 exports 3 stars 2.99 score 77 dependencies 1 dependents 9 mentions 275 scripts 536 downloads

Last updated 6 months agofrom:0329f8e6ec. Checks:OK: 1 NOTE: 4 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 28 2024
R-4.5-winNOTEAug 28 2024
R-4.5-linuxNOTEAug 28 2024
R-4.4-winNOTEAug 28 2024
R-4.4-macERRORAug 28 2024
R-4.3-winNOTEAug 28 2024
R-4.3-macERRORAug 28 2024

Exports:bceabest_interv_given_kce_tableceac.plotceaf.plotceef.plotceplane.plotCEriskav<-compute_CEACcompute_EIBcompute_EVIcompute_IBcompute_ICERcompute_kstarcompute_olcompute_Ucompute_Ustarcompute_vicontourcontour2createInputsdiag.evppieib.plotevi.plotevppiib.plotinfo_rank_plotlyinfo.rankis.bcealine_labelsmake_legend_plotlymake.reportmce.plotmixedAn<-multi.cenew_bceaprep_ceplane_paramssetComparisonssetComparisons<-setKmax<-setReferenceGroup<-sim_tablestruct.psatabulate_meansvalidate_bcea

Dependencies:abindbackportsBHbriocallrcheckmateclicodacolorspacecrayondescdiffobjdigestdistributionaldplyrevaluatefansifarverfsgenericsggplot2gluegridExtragtableinlineisobandjsonlitelabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsMCMCvismgcvmunsellnlmenumDerivoverlappingpillarpkgbuildpkgconfigpkgloadplyrposteriorpraiseprocessxpspurrrQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackrematch2reshape2rlangrprojrootrstanscalesStanHeadersstringistringrtensorAtestthattibbletidyselectutf8vctrsviridisLitewaldowithr

Contour Plots

Rendered fromcontour.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2022-04-21

Cost-Effectiveness Acceptability Curve Plots

Rendered fromceac.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2020-07-21

Cost-Effectiveness Efficiency Frontier

Rendered fromceef.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2021-10-08

Cost-effectiveness plane

Rendered fromceplane.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2024-02-23
Started: 2021-10-08

Expected Incremental Benefit Plot

Rendered fromeib.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2021-10-08

Getting Started

Rendered frombcea.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2020-09-21

Paired vs Multiple Comparisons

Rendered frompaired_vs_multiple_comps.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2022-09-03
Started: 2021-10-08

Risk Aversion Analysis

Rendered fromCEriskav.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2023-11-10
Started: 2021-10-08

Set bcea() Parameters: Constructor and Setters

Rendered fromSet_bcea_parameters.Rmdusingknitr::knitron Aug 28 2024.

Last update: 2022-09-03
Started: 2020-09-21

Readme and manuals

Help Manual

Help pageTopics
Create Bayesian Cost-Effectiveness Analysis Objectbcea bcea.bugs bcea.default bcea.rjags bcea.rstan
Optimal interventionbest_interv_given_k
Cost-Effectiveness Acceptability Curve (CEAC) Plotceac.plot ceac.plot.bcea
Cost-Effectiveness Acceptability Frontier (CEAF) plotceaf.plot ceaf.plot.pairwise
Cost-effectiveness Efficiency Frontier Plot By Graph Deviceceef_plot_base ceef_plot_ggplot ceef_plot_graph
Cost-Effectiveness Efficiency Frontier (CEEF) Plotceef.plot ceef.plot.bcea
Cost-Effectiveness Plane Plot By Graph Deviceceplane_plot_base ceplane_plot_base.bcea ceplane_plot_ggplot ceplane_plot_ggplot.bcea ceplane_plot_graph ceplane_plot_plotly ceplane_plot_plotly.bcea
Cost-effectiveness Plane Plotceplane.plot ceplane.plot.bcea
Cost-effectiveness Analysis Including a Parameter of Risk AversionCEriskav CEriskav.default CEriskav<- CEriskav<-.bcea CEriskav<-.default CEriskav_assign
Cost-effectiveness Plot Including a Parameter of Risk AversionCEriskav_plot_base CEriskav_plot_ggplot CEriskav_plot_graph
Compute Cost-Effectiveness Acceptability Curvecompute_CEAC
Compute Cost-Effectiveness Acceptability Frontiercompute_ceaf
Compute Expected Incremental Benefitcompute_EIB
Calculate Credible Intervalscompute_eib_cri
Compute Expected Value of Informationcompute_EVI
Compute Incremental Benefitcompute_IB
Compute Incremental Cost-Effectiveness Ratiocompute_ICER
Compute k^*compute_kstar
Compute Opportunity Losscompute_ol
Compute Probability Best Interventioncompute_p_best_interv
Compute U Statisticcompute_U
Compute NB for mixture of interventionscompute_Ubar
Compute Ustar Statisticcompute_Ustar
Compute Value of Informationcompute_vi
Contour Cost-Effectiveness Planecontour_base contour_ggplot contour_graph
Contour Plots for the Cost-Effectiveness Planecontour contour.bcea
Specialised CE-plane Contour Plotcontour2 contour2.bcea
Create Inputs for EVPI CalculationcreateInputs createInputs.bugs createInputs.data.frame createInputs.default createInputs.numeric createInputs.rjags createInputs.stanfit
Expected Incremental Benefit Plot By Graph Deviceeib_plot_base eib_plot_ggplot eib_plot_graph eib_plot_plotly
Expected Incremental Benefit (EIB) Ploteib.plot eib.plot.bcea
Expected Value of Information Plot By Graph Deviceevi_plot_base evi_plot_ggplot evi_plot_graph evi_plot_plotly
Expected Value of Information (EVI) Plotevi.plot evi.plot.bcea
EVI Plot of the Health Economic Analysis For Mixed Analysisevi.plot.mixedAn
Expected Value of Perfect Partial Information (EVPPI) for Selected Parametersevppi evppi.bcea evppi.default
Plot Expected Value of Partial Information With Respect to a Set of Parametersevppi_plot_base evppi_plot_ggplot evppi_plot_graph
IB plot base R versionib_plot_base ib_plot_ggplot ib_plot_graph
Incremental Benefit (IB) Distribution Plotib.plot ib.plot.bcea
Info Rank Plot By Graph Deviceinfo_rank_base info_rank_ggplot info_rank_graph info_rank_plotly
Information-Rank Plot for bcea Classinfo.rank info.rank.bcea
Check bcea Classis.bcea
Make Reportmake.report
Cost-Effectiveness Analysis When Multiple (Possibly Non-Cost-Effective) Interventions are Present on the MarketmixedAn mixedAn.default mixedAn<-
Cost-effectiveness Analysis With Multiple Comparisonmulti.ce multi.ce.bcea
Constructor for bceanew_bcea
Summary Plot of the Health Economic Analysisplot.bcea
Plots EIB and EVPI for the Risk Aversion Caseplot.CEriskav
Plot Expected Value of Partial Information With Respect to a Set of Parametersplot.evppi
bcea Print Methodprint.bcea
Set Comparisons GroupsetComparisons
Set Comparison GroupsetComparisons<- setComparisons<-.bcea setComparisons<-.default setComparisons_assign
Set Maximum Willingness to PaysetKmax<- setKmax<-.bcea setKmax<-.default setKmax_assign
Set Reference GroupsetReferenceGroup<- setReferenceGroup<-.bcea setReferenceGroup<-.default setReferenceGroup_assign
Table of Simulation Statistics for the Health Economic Modelsim_table sim_table.bcea
Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventionscost data eff life.years pi_post Smoking smoking smoking_output treats
Structural Probability Sensitivity Analysisstruct.psa
Summary Method for Objects of Class 'bcea'summary.bcea
Summary Methods For Objects in the Class 'mixedAn' (Mixed Analysis)summary.mixedAn
Summary Method for Objects of Class 'pairwise'summary.pairwise
Calculate Dataset For ICERs From bcea Objecttabulate_means
Data set for the Bayesian model for the cost-effectiveness of influenza vaccinationc.pts cost.GP cost.hosp cost.otc cost.time.off cost.time.vac cost.travel cost.trt1 cost.trt2 cost.vac e.pts N N.outcomes N.resources QALYs.adv QALYs.death QALYs.hosp QALYs.inf QALYs.pne Vaccine vaccine vaccine_mat